| 1 | Sat 6 Aug 2016 | 20-0 v WrexhamWrexham 0-0 Dover Athletic | National League |
| 2 | Tue 9 Aug 2016 | 21-4 v Boreham WoodDover Athletic 1-4 Boreham Wood | National League |
| 3 | Sat 13 Aug 2016 | 22-0 v North Ferriby UnitedDover Athletic 2-0 North Ferriby United | National League |
| 4 | Tue 16 Aug 2016 | 24-2 v EastleighEastleigh 2-4 Dover Athletic | National League |
| 5 | Sat 20 Aug 2016 | 23-1 v BarrowDover Athletic 3-1 Barrow | National League |
| 6 | Sat 27 Aug 2016 | 21-2 v Torquay UnitedTorquay United 2-1 Dover Athletic | National League |
| 7 | Mon 29 Aug 2016 | 21-2 v Aldershot TownDover Athletic 1-2 Aldershot Town | National League |
| 8 | Sat 3 Sep 2016 | 21-0 v SouthportSouthport 0-1 Dover Athletic | National League |
| 9 | Sat 10 Sep 2016 | 24-3 v Forest Green RoversDover Athletic 4-3 Forest Green Rovers | National League |
| 10 | Tue 13 Sep 2016 | 20-2 v Dagenham & RedbridgeDagenham & Redbridge 2-0 Dover Athletic | National League |
| 11 | Sat 17 Sep 2016 | 21-0 v York CityYork City 0-1 Dover Athletic | National League |
| 12 | Sat 24 Sep 2016 | 22-0 v Lincoln CityDover Athletic 2-0 Lincoln City | National League |
| 13 | Sat 1 Oct 2016 | 20-5 v ChesterChester 5-0 Dover Athletic | National League |
| 14 | Tue 4 Oct 2016 | 23-1 v Sutton UnitedDover Athletic 3-1 Sutton United | National League |
| 15 | Sat 22 Oct 2016 | 26-1 v Braintree TownDover Athletic 6-1 Braintree Town | National League |
| 16 | Tue 25 Oct 2016 | 22-0 v BromleyBromley 0-2 Dover Athletic | National League |
| 17 | Sat 29 Oct 2016 | 21-4 v Tranmere RoversDover Athletic 1-4 Tranmere Rovers | National League |
| 18 | Sat 5 Nov 2016 | 21-1 v Cambridge UnitedCambridge United 1-1 Dover Athletic | Emirates FA Cup First Round |
| 19 | Thu 17 Nov 2016 | 22-4 v Cambridge UnitedDover Athletic 2-4 Cambridge United | Emirates FA Cup First Round |
| 20 | Sat 19 Nov 2016 | 22-0 v GuiseleyDover Athletic 2-0 Guiseley | National League |
| 21 | Tue 22 Nov 2016 | 23-1 v WokingDover Athletic 3-1 Woking | National League |
| 22 | Tue 29 Nov 2016 | 26-0 v Sutton UnitedSutton United 0-6 Dover Athletic | National League |
| 23 | Sat 3 Dec 2016 | 21-2 v Dagenham & RedbridgeDover Athletic 1-2 Dagenham & Redbridge | National League |
| 24 | Sat 10 Dec 2016 | 21-1 v DartfordDartford 1-1 Dover Athletic | FA Trophy First Round |
| 25 | Tue 13 Dec 2016 | 21-2 v DartfordDover Athletic 1-2 Dartford | FA Trophy First Round |
| 26 | Sat 17 Dec 2016 | 21-1 v Forest Green RoversForest Green Rovers 1-1 Dover Athletic | National League |
| 27 | Mon 26 Dec 2016 | 21-1 v Maidstone UnitedDover Athletic 1-1 Maidstone United | National League |
| 28 | Sun 1 Jan 2017 | 24-1 v Maidstone UnitedMaidstone United 1-4 Dover Athletic | National League |
| 29 | Sat 7 Jan 2017 | 22-2 v York CityDover Athletic 2-2 York City | National League |
| 30 | Tue 10 Jan 2017 | 21-2 v Macclesfield TownMacclesfield Town 2-1 Dover Athletic | National League |
| 31 | Fri 20 Jan 2017 | 20-2 v Lincoln CityLincoln City 2-0 Dover Athletic | National League |
| 32 | Sat 28 Jan 2017 | 23-1 v ChesterDover Athletic 3-1 Chester | National League |
| 33 | Sat 11 Feb 2017 | 21-1 v WrexhamDover Athletic 1-1 Wrexham | National League |
| 34 | Sat 18 Feb 2017 | 22-1 v North Ferriby UnitedNorth Ferriby United 1-2 Dover Athletic | National League |
| 35 | Sat 25 Feb 2017 | 23-0 v EastleighDover Athletic 3-0 Eastleigh | National League |
| 36 | Tue 28 Feb 2017 | 20-1 v WokingWoking 1-0 Dover Athletic | National League |
| 37 | Sat 4 Mar 2017 | 340-0 v Solihull MoorsDover Athletic 0-0 Solihull Moors | National League |
| 38 | Tue 14 Mar 2017 | 20-5 v Boreham WoodBoreham Wood 5-0 Dover Athletic | National League |
| 39 | Sat 18 Mar 2017 | 21-0 v BromleyDover Athletic 1-0 Bromley | National League |
| 40 | Sat 25 Mar 2017 | 24-0 v GuiseleyGuiseley 0-4 Dover Athletic | National League |
| 41 | Tue 28 Mar 2017 | 20-1 v Tranmere RoversTranmere Rovers 1-0 Dover Athletic | National League |
| 42 | Sat 1 Apr 2017 | 22-0 v GatesheadDover Athletic 2-0 Gateshead | National League |
| 43 | Sat 8 Apr 2017 | 22-1 v Braintree TownBraintree Town 1-2 Dover Athletic | National League |
| 44 | Fri 14 Apr 2017 | 23-0 v SouthportDover Athletic 3-0 Southport | National League |
| 45 | Mon 17 Apr 2017 | 20-1 v Aldershot TownAldershot Town 1-0 Dover Athletic | National League |
| 46 | Sat 22 Apr 2017 | 21-2 v Torquay UnitedDover Athletic 1-2 Torquay United | National League |
| 47 | Tue 25 Apr 2017 | 22-2 v Macclesfield TownDover Athletic 2-2 Macclesfield Town | National League |
| 48 | Sat 29 Apr 2017 | 23-2 v BarrowBarrow 2-3 Dover Athletic | National League |
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