| 1 | Sat 12 Sep 2020 | 41-5 v Carshalton AthleticCarshalton Athletic 5-1 Whitstable Town | Emirates FA Cup Preliminary Round |
| 2 | Sat 19 Sep 2020 | 142-3 v SittingbourneSittingbourne 3-2 Whitstable Town | Isthmian League - South East Division |
| 3 | Sat 3 Oct 2020 | 4 2-0 v Haywards Heath TownHaywards Heath Town 0-2 Whitstable Town | Isthmian League - South East Division |
| 4 | Sat 10 Oct 2020 | 41-0 v Burgess Hill TownWhitstable Town 1-0 Burgess Hill Town | Isthmian League - South East Division |
| 5 | Tue 13 Oct 2020 | 50-6 v Hythe TownWhitstable Town 0-6 Hythe Town | Isthmian League - South East Division |
| 6 | Sat 17 Oct 2020 | 40-1 v Ashford Town (Middx)Ashford Town (Middx) 1-0 Whitstable Town | Buildbase FA Trophy Second Qualifying Round |
| 7 | Sat 24 Oct 2020 | 42-2 v East Grinstead TownEast Grinstead Town 2-2 Whitstable Town | Isthmian League - South East Division |
| 8 | Tue 27 Oct 2020 | 4 1-1 v Cray Valley PMWhitstable Town 1-1 Cray Valley PM | Isthmian League - South East Division |
| 9 | Sat 31 Oct 2020 | 40-2 v VCD AthleticVCD Athletic 2-0 Whitstable Town | Isthmian League - South East Division |
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