| 1 | Tue 22 Oct | 311-1 v ChesterfieldChesterfield 1-1 Colchester United | Sky Bet League Two |
| 2 | Sat 9 Nov | 311-1 v BarrowBarrow 1-1 Colchester United | Sky Bet League Two |
| 3 | Sat 16 Nov | 311-1 v Bradford CityColchester United 1-1 Bradford City | Sky Bet League Two |
| 4 | Sat 30 Nov | 310-0 v Fleetwood TownFleetwood Town 0-0 Colchester United | Sky Bet League Two |
| 5 | Tue 3 Dec | 314-0 v Swindon TownColchester United 4-0 Swindon Town | Sky Bet League Two |
| 6 | Tue 10 Dec | 312-0 v AFC WimbledonColchester United 2-0 AFC Wimbledon | EFL Trophy Second Round |
| 7 | Sat 14 Dec | 310-0 v Newport CountyColchester United 0-0 Newport County | Sky Bet League Two |
| 8 | Fri 20 Dec | 310-0 v Crewe AlexandraCrewe Alexandra 0-0 Colchester United | Sky Bet League Two |
| 9 | Thu 26 Dec | 312-0 v GillinghamColchester United 2-0 Gillingham | Sky Bet League Two |
| 10 | Sun 29 Dec | 31 1-1 v Doncaster RoversColchester United 1-1 Doncaster Rovers | Sky Bet League Two |
| 11 | Sat 4 Jan | 310-2 v Accrington StanleyColchester United 0-2 Accrington Stanley | Sky Bet League Two |
| 12 | Tue 14 Jan | 311-2 v Cheltenham TownCheltenham Town 2-1 Colchester United | EFL Trophy Third Round |
| 13 | Sat 18 Jan | 311-0 v BromleyBromley 0-1 Colchester United | Sky Bet League Two |
| 14 | Tue 21 Jan | 310-0 v Harrogate TownHarrogate Town 0-0 Colchester United | Sky Bet League Two |
| 15 | Sat 25 Jan | 31 1-0 v MorecambeColchester United 1-0 Morecambe | Sky Bet League Two |
| 16 | Sat 1 Feb | 313-1 v Tranmere RoversTranmere Rovers 1-3 Colchester United | Sky Bet League Two |
| 17 | Sat 1 Mar | 311-0 v Milton Keynes DonsMilton Keynes Dons 0-1 Colchester United | Sky Bet League Two |
| 18 | Tue 4 Mar | 311-0 v ChesterfieldColchester United 1-0 Chesterfield | Sky Bet League Two |
| 19 | Sat 8 Mar | 311-0 v Cheltenham TownCheltenham Town 0-1 Colchester United | Sky Bet League Two |
| 20 | Sat 22 Mar | 311-4 v Bradford CityBradford City 4-1 Colchester United | Sky Bet League Two |
| 21 | Fri 28 Mar | 311-2 v Grimsby TownColchester United 1-2 Grimsby Town | Sky Bet League Two |
| 22 | Tue 1 Apr | 31 1-1 v GillinghamGillingham 1-1 Colchester United | Sky Bet League Two |
| 23 | Sat 5 Apr | 311-0 v Notts CountyColchester United 1-0 Notts County | Sky Bet League Two |
| 24 | Sat 12 Apr | 312-0 v Newport CountyNewport County 0-2 Colchester United | Sky Bet League Two |
| 25 | Fri 18 Apr | 310-0 v Crewe AlexandraColchester United 0-0 Crewe Alexandra | Sky Bet League Two |
| 26 | Sat 26 Apr | 311-4 v Salford CitySalford City 4-1 Colchester United | Sky Bet League Two |
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