| 1 | Tue 22 Aug | 15 3-0 v Bedfont SportsHerne Bay 3-0 Bedfont Sports | Emirates FA Cup Preliminary Round Replay |
| 2 | Sat 2 Sep | 100-1 v RedhillRedhill 1-0 Herne Bay | Emirates FA Cup First Qualifying Round |
| 3 | Sat 9 Sep | 16 1-6 v LeatherheadHerne Bay 1-6 Leatherhead | Isuzu FA Trophy First Qualifying Round |
| 4 | Sat 30 Sep | 16 2-0 v Phoenix SportsHerne Bay 2-0 Phoenix Sports | Isthmian League - South East Division |
| 5 | Sat 7 Oct | 10 1-1 v Broadbridge HeathBroadbridge Heath 1-1 Herne Bay | Isthmian League - South East Division |
| 6 | Tue 17 Oct | 61-1 v Folkestone InvictaHerne Bay 1-1 Folkestone Invicta | Velocity Cup Third Round |
| 7 | Sat 21 Oct | 10 3-3 v Beckenham TownBeckenham Town 3-3 Herne Bay | Isthmian League - South East Division |
| 8 | Sat 28 Oct | 100-0 v Erith & BelvedereHerne Bay 0-0 Erith & Belvedere | Isthmian League - South East Division |
| 9 | Sat 11 Nov | 103-3 v Three BridgesHerne Bay 3-3 Three Bridges | Isthmian League - South East Division |
| 10 | Sat 18 Nov | 104-1 v Littlehampton TownHerne Bay 4-1 Littlehampton Town | Isthmian League - South East Division |
| 11 | Sat 25 Nov | 102-2 v Sheppey UnitedSheppey United 2-2 Herne Bay | Isthmian League - South East Division |
| 12 | Sat 2 Dec | 60-1 v Cray Valley PMHerne Bay 0-1 Cray Valley PM | Isthmian League - South East Division |
| 13 | Sat 16 Dec | 104-3 v HorndeanHerne Bay 4-3 Horndean | Isthmian League - South East Division |
| 14 | Tue 26 Dec | 10 1-3 v RamsgateRamsgate 3-1 Herne Bay | Isthmian League - South East Division |
| 15 | Sat 30 Dec | 101-2 v Burgess Hill TownBurgess Hill Town 2-1 Herne Bay | Isthmian League - South East Division |
| 16 | Mon 1 Jan | 102-2 v Ashford UnitedHerne Bay 2-2 Ashford United | Isthmian League - South East Division |
| 17 | Sat 6 Jan | 10 2-1 v Sevenoaks TownSevenoaks Town 1-2 Herne Bay | Isthmian League - South East Division |
| 18 | Sat 13 Jan | 10 2-0 v MersthamHerne Bay 2-0 Merstham | Isthmian League - South East Division |
| 19 | Tue 16 Jan | 103-1 v Chichester CityChichester City 1-3 Herne Bay | Isthmian League - South East Division |
| 20 | Sat 20 Jan | 102-0 v Phoenix SportsPhoenix Sports 0-2 Herne Bay | Isthmian League - South East Division |
| 21 | Sat 27 Jan | 100-3 v SittingbourneHerne Bay 0-3 Sittingbourne | Isthmian League - South East Division |
| 22 | Sat 3 Feb | 103-0 v LancingLancing 0-3 Herne Bay | Isthmian League - South East Division |
| 23 | Sat 10 Feb | 103-1 v Broadbridge HeathHerne Bay 3-1 Broadbridge Heath | Isthmian League - South East Division |
| 24 | Sat 17 Feb | 10 3-2 v Beckenham TownHerne Bay 3-2 Beckenham Town | Isthmian League - South East Division |
| 25 | Sat 24 Feb | 101-1 v Erith & BelvedereErith & Belvedere 1-1 Herne Bay | Isthmian League - South East Division |
| 26 | Sat 2 Mar | 61-2 v Hythe TownHerne Bay 1-2 Hythe Town | Isthmian League - South East Division |
| 27 | Sat 9 Mar | 61-1 v Three BridgesThree Bridges 1-1 Herne Bay | Isthmian League - South East Division |
| 28 | Sat 16 Mar | 62-2 v MersthamMerstham 2-2 Herne Bay | Isthmian League - South East Division |
| 29 | Sat 23 Mar | 61-2 v Sevenoaks TownHerne Bay 1-2 Sevenoaks Town | Isthmian League - South East Division |
| 30 | Sat 30 Mar | 173-2 v East Grinstead TownHerne Bay 3-2 East Grinstead Town | Isthmian League - South East Division |
| 31 | Mon 1 Apr | 61-3 v Ashford UnitedAshford United 3-1 Herne Bay | Isthmian League - South East Division |
| 32 | Sat 6 Apr | 102-1 v Littlehampton TownLittlehampton Town 1-2 Herne Bay | Isthmian League - South East Division |
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