| 1 | Sat 12 Aug | 172-2 v Burgess Hill TownHerne Bay 2-2 Burgess Hill Town | Isthmian League - South East Division |
| 2 | Tue 22 Aug | 33-0 v Bedfont SportsHerne Bay 3-0 Bedfont Sports | Emirates FA Cup Preliminary Round Replay |
| 3 | Sat 26 Aug | 3 2-1 v East Grinstead TownEast Grinstead Town 1-2 Herne Bay | Isthmian League - South East Division |
| 4 | Mon 28 Aug | 31-2 v RamsgateHerne Bay 1-2 Ramsgate | Isthmian League - South East Division |
| 5 | Sat 2 Sep | 30-1 v RedhillRedhill 1-0 Herne Bay | Emirates FA Cup First Qualifying Round |
| 6 | Sat 9 Sep | 4 1-6 v LeatherheadHerne Bay 1-6 Leatherhead | Isuzu FA Trophy First Qualifying Round |
| 7 | Tue 19 Sep | 32-1 v Sheppey UnitedSheppey United 1-2 Herne Bay | Velocity Cup Second Round |
| 8 | Sat 23 Sep | 34-2 v HorndeanHorndean 2-4 Herne Bay | Isthmian League - South East Division |
| 9 | Sat 30 Sep | 32-0 v Phoenix SportsHerne Bay 2-0 Phoenix Sports | Isthmian League - South East Division |
| 10 | Sat 7 Oct | 31-1 v Broadbridge HeathBroadbridge Heath 1-1 Herne Bay | Isthmian League - South East Division |
| 11 | Tue 10 Oct | 110-2 v SittingbourneSittingbourne 2-0 Herne Bay | Isthmian League - South East Division |
| 12 | Sat 14 Oct | 123-1 v LancingHerne Bay 3-1 Lancing | Isthmian League - South East Division |
| 13 | Tue 17 Oct | 71-1 v Folkestone InvictaHerne Bay 1-1 Folkestone Invicta | Velocity Cup Third Round |
| 14 | Sat 21 Oct | 113-3 v Beckenham TownBeckenham Town 3-3 Herne Bay | Isthmian League - South East Division |
| 15 | Sat 28 Oct | 30-0 v Erith & BelvedereHerne Bay 0-0 Erith & Belvedere | Isthmian League - South East Division |
| 16 | Sat 18 Nov | 124-1 v Littlehampton TownHerne Bay 4-1 Littlehampton Town | Isthmian League - South East Division |
| 17 | Sat 25 Nov | 12 2-2 v Sheppey UnitedSheppey United 2-2 Herne Bay | Isthmian League - South East Division |
| 18 | Sat 2 Dec | 30-1 v Cray Valley PMHerne Bay 0-1 Cray Valley PM | Isthmian League - South East Division |
| 19 | Sat 16 Dec | 3 4-3 v HorndeanHerne Bay 4-3 Horndean | Isthmian League - South East Division |
| 20 | Tue 26 Dec | 31-3 v RamsgateRamsgate 3-1 Herne Bay | Isthmian League - South East Division |
| 21 | Sat 30 Dec | 31-2 v Burgess Hill TownBurgess Hill Town 2-1 Herne Bay | Isthmian League - South East Division |
| 22 | Mon 1 Jan | 32-2 v Ashford UnitedHerne Bay 2-2 Ashford United | Isthmian League - South East Division |
| 23 | Sat 6 Jan | 32-1 v Sevenoaks TownSevenoaks Town 1-2 Herne Bay | Isthmian League - South East Division |
| 24 | Sat 13 Jan | 32-0 v MersthamHerne Bay 2-0 Merstham | Isthmian League - South East Division |
| 25 | Tue 16 Jan | 33-1 v Chichester CityChichester City 1-3 Herne Bay | Isthmian League - South East Division |
| 26 | Sat 20 Jan | 32-0 v Phoenix SportsPhoenix Sports 0-2 Herne Bay | Isthmian League - South East Division |
| 27 | Sat 27 Jan | 3 0-3 v SittingbourneHerne Bay 0-3 Sittingbourne | Isthmian League - South East Division |
| 28 | Sat 3 Feb | 33-0 v LancingLancing 0-3 Herne Bay | Isthmian League - South East Division |
| 29 | Sat 10 Feb | 33-1 v Broadbridge HeathHerne Bay 3-1 Broadbridge Heath | Isthmian League - South East Division |
| 30 | Sat 17 Feb | 33-2 v Beckenham TownHerne Bay 3-2 Beckenham Town | Isthmian League - South East Division |
| 31 | Sat 24 Feb | 31-1 v Erith & BelvedereErith & Belvedere 1-1 Herne Bay | Isthmian League - South East Division |
| 32 | Sat 2 Mar | 3 1-2 v Hythe TownHerne Bay 1-2 Hythe Town | Isthmian League - South East Division |
| 33 | Sat 9 Mar | 31-1 v Three BridgesThree Bridges 1-1 Herne Bay | Isthmian League - South East Division |
| 34 | Sat 16 Mar | 32-2 v MersthamMerstham 2-2 Herne Bay | Isthmian League - South East Division |
| 35 | Sat 23 Mar | 3 1-2 v Sevenoaks TownHerne Bay 1-2 Sevenoaks Town | Isthmian League - South East Division |
| 36 | Tue 26 Mar | 33-1 v Hythe TownHythe Town 1-3 Herne Bay | Isthmian League - South East Division |
| 37 | Mon 1 Apr | 31-3 v Ashford UnitedAshford United 3-1 Herne Bay | Isthmian League - South East Division |
| 38 | Sat 6 Apr | 32-1 v Littlehampton TownLittlehampton Town 1-2 Herne Bay | Isthmian League - South East Division |
| 39 | Sat 13 Apr | 31-2 v Sheppey UnitedHerne Bay 1-2 Sheppey United | Isthmian League - South East Division |
| 40 | Sat 20 Apr | 32-4 v Cray Valley PMCray Valley PM 4-2 Herne Bay | Isthmian League - South East Division |
| 41 | Sat 27 Apr | 33-3 v Chichester CityHerne Bay 3-3 Chichester City | Isthmian League - South East Division |
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