| 1 | Sat 9 Sep | 151-6 v LeatherheadHerne Bay 1-6 Leatherhead | Isuzu FA Trophy First Qualifying Round | 1 |
| 2 | Tue 19 Sep | 102-1 v Sheppey UnitedSheppey United 1-2 Herne Bay | Velocity Cup Second Round | 1 |
| 3 | Sat 23 Sep | 104-2 v HorndeanHorndean 2-4 Herne Bay | Isthmian League - South East Division | 2 |
| 4 | Sat 30 Sep | 92-0 v Phoenix SportsHerne Bay 2-0 Phoenix Sports | Isthmian League - South East Division | 1 |
| 5 | Sat 14 Oct | 93-1 v LancingHerne Bay 3-1 Lancing | Isthmian League - South East Division | 1 |
| 6 | Sat 21 Oct | 93-3 v Beckenham TownBeckenham Town 3-3 Herne Bay | Isthmian League - South East Division | 2 |
| 7 | Sat 11 Nov | 9 3-3 v Three BridgesHerne Bay 3-3 Three Bridges | Isthmian League - South East Division | 3 |
| 8 | Sat 16 Dec | 94-3 v HorndeanHerne Bay 4-3 Horndean | Isthmian League - South East Division | 2 |
| 9 | Mon 1 Jan | 92-2 v Ashford UnitedHerne Bay 2-2 Ashford United | Isthmian League - South East Division | 1 |
| 10 | Sat 6 Jan | 9 2-1 v Sevenoaks TownSevenoaks Town 1-2 Herne Bay | Isthmian League - South East Division | 1 |
| 11 | Sat 20 Jan | 92-0 v Phoenix SportsPhoenix Sports 0-2 Herne Bay | Isthmian League - South East Division | 2 |
| 12 | Sat 10 Feb | 93-1 v Broadbridge HeathHerne Bay 3-1 Broadbridge Heath | Isthmian League - South East Division | 3 |
| 13 | Sat 17 Feb | 93-2 v Beckenham TownHerne Bay 3-2 Beckenham Town | Isthmian League - South East Division | 2 |
| 14 | Sat 30 Mar | 93-2 v East Grinstead TownHerne Bay 3-2 East Grinstead Town | Isthmian League - South East Division | 1 |
| 15 | Mon 1 Apr | 91-3 v Ashford UnitedAshford United 3-1 Herne Bay | Isthmian League - South East Division | 1 |
| 16 | Sat 20 Apr | 92-4 v Cray Valley PMCray Valley PM 4-2 Herne Bay | Isthmian League - South East Division | 1 |
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