| 1 | Tue 15 Aug | 60-2 v AFC WimbledonColchester United 0-2 AFC Wimbledon |
| 2 | Sat 19 Aug | 62-3 v Milton Keynes DonsColchester United 2-3 Milton Keynes Dons |
| 3 | Sat 14 Oct | 60-5 v Forest Green RoversForest Green Rovers 5-0 Colchester United |
| 4 | Tue 24 Oct | 6 3-2 v Grimsby TownGrimsby Town 2-3 Colchester United |
| 5 | Sat 28 Oct | 61-0 v Accrington StanleyAccrington Stanley 0-1 Colchester United |
| 6 | Tue 7 Nov | 63-1 v Swindon TownColchester United 3-1 Swindon Town |
| 7 | Sat 11 Nov | 6 1-1 v Sutton UnitedColchester United 1-1 Sutton United |
| 8 | Sat 18 Nov | 60-2 v Stockport CountyStockport County 2-0 Colchester United |
| 9 | Sat 25 Nov | 61-4 v BarrowColchester United 1-4 Barrow |
| 10 | Tue 28 Nov | 61-3 v Doncaster RoversDoncaster Rovers 3-1 Colchester United |
| 11 | Fri 22 Dec | 62-1 v Salford CityColchester United 2-1 Salford City |
| 12 | Tue 26 Dec | 60-1 v Milton Keynes DonsMilton Keynes Dons 1-0 Colchester United |
| 13 | Fri 29 Dec | 63-5 v AFC WimbledonAFC Wimbledon 5-3 Colchester United |
| 14 | Mon 1 Jan | 60-1 v GillinghamColchester United 0-1 Gillingham |
| 15 | Sat 6 Jan | 62-2 v Swindon TownSwindon Town 2-2 Colchester United |
| 16 | Sat 13 Jan | 61-1 v Bradford CityColchester United 1-1 Bradford City |
| 17 | Sat 27 Jan | 6 1-0 v MorecambeMorecambe 0-1 Colchester United |
| 18 | Tue 27 Feb | 61-1 v Salford CitySalford City 1-1 Colchester United |
| 19 | Sat 9 Mar | 60-2 v BarrowBarrow 2-0 Colchester United |
| 20 | Sat 16 Mar | 61-1 v WalsallColchester United 1-1 Walsall |
| 21 | Sat 23 Mar | 61-1 v Mansfield TownMansfield Town 1-1 Colchester United |
| 22 | Fri 29 Mar | 62-1 v Newport CountyColchester United 2-1 Newport County |
| 23 | Mon 1 Apr | 61-1 v Tranmere RoversTranmere Rovers 1-1 Colchester United |
| 24 | Sat 6 Apr | 61-2 v WrexhamColchester United 1-2 Wrexham |
| 25 | Tue 9 Apr | 61-2 v Stockport CountyColchester United 1-2 Stockport County |
| 26 | Sat 13 Apr | 6 3-2 v Crawley TownCrawley Town 2-3 Colchester United |
| 27 | Tue 16 Apr | 6 2-0 v Grimsby TownColchester United 2-0 Grimsby Town |
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